 |
SNPper - IIPGA PrettyBase Importer |
Goldenpath: hg16
dbSNP: build 118
Login: pgabot |
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|
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| Imported SNPs |
Position in
refseq |
Absolute
position |
Relative
positions |
AA
change |
All 1 |
All 2 |
All 3 |
All 4 |
Minor allele
frequency |
Base in
refseq |
Known base
(from GoldenPath) |
Known SNP
(from dbSNP) |
Assigned name |
| 3557 |
chr16:31305927 |
-1519 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-3557 |
| 3862 |
chr16:31306232 |
-1214 A/T |
|
T (80) |
A (10) |
|
|
11% |
T |
T |
|
IIPGA-ITGAM-3862 |
| 3982 |
chr16:31306352 |
-1094 C/T |
|
C (87) |
T (5) |
|
|
5% |
C |
C |
|
IIPGA-ITGAM-3982 |
| 3991 |
chr16:31306361 |
-1085 A/T |
|
T (91) |
A (1) |
|
|
1% |
T |
T |
|
IIPGA-ITGAM-3991 |
| 4306 |
chr16:31306676 |
-770 G/T |
|
G (91) |
T (3) |
|
|
3% |
G |
G |
|
IIPGA-ITGAM-4306 |
| 4307 |
chr16:31306677 |
-769 A/C |
|
C (91) |
A (3) |
|
|
3% |
C |
C |
|
IIPGA-ITGAM-4307 |
| 4625 |
chr16:31306995 |
-451 G/T |
|
T (93) |
G (1) |
|
|
1% |
T |
T |
|
IIPGA-ITGAM-4625 |
| 4753 |
chr16:31307123 |
-323 A/G |
|
A (65) |
G (29) |
|
|
31% |
G |
G |
rs7193943 |
IIPGA-ITGAM-4753 |
| 5038 |
chr16:31307408 |
-38 C/T |
|
C (92) |
T (2) |
|
|
2% |
C |
C |
|
IIPGA-ITGAM-5038 |
| 5235 |
chr16:31307605 |
159 A/G |
|
A (67) |
G (27) |
|
|
29% |
G |
G |
|
IIPGA-ITGAM-5235 |
| 5304 |
chr16:31307674 |
228 C/G |
|
C (93) |
G (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-5304 |
| 5332 |
chr16:31307702 |
256 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-5332 |
| 5390 |
chr16:31307760 |
314 C/T |
|
T (87) |
C (7) |
|
|
7% |
T |
T |
rs8063978 |
IIPGA-ITGAM-5390 |
| 5470 |
chr16:31307840 |
394 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-5470 |
| 5670 |
chr16:31308040 |
594 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-5670 |
| 5681 |
chr16:31308051 |
605 C/T |
|
C (89) |
T (5) |
|
|
5% |
C |
C |
rs1549298 |
IIPGA-ITGAM-5681 |
| 6043 |
chr16:31308413 |
967 A/G |
|
G (85) |
A (9) |
|
|
10% |
G |
G |
|
IIPGA-ITGAM-6043 |
| 6104 |
chr16:31308474 |
1028 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-6104 |
| 6127 |
chr16:31308497 |
1051 A/G |
|
G (92) |
A (2) |
|
|
2% |
G |
G |
|
IIPGA-ITGAM-6127 |
| 6353 |
chr16:31308723 |
1277 C/T |
|
C (91) |
T (3) |
|
|
3% |
C |
C |
|
IIPGA-ITGAM-6353 |
| 6819 |
chr16:31309189 |
1743 C/T |
|
C (64) |
T (30) |
|
|
32% |
T |
T |
rs3764327 |
IIPGA-ITGAM-6819 |
| 7220 |
chr16:31309590 |
2144 A/T |
|
A (64) |
T (30) |
|
|
32% |
T |
T |
rs7196256 |
IIPGA-ITGAM-7220 |
| 10071 |
chr16:31312441 |
4995 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-10071 |
| 10171 |
chr16:31312541 |
5095 A/G |
|
G (87) |
A (7) |
|
|
7% |
G |
G |
rs4889642 |
IIPGA-ITGAM-10171 |
| 10262 |
chr16:31312632 |
5186 T |
|
T (89) |
X (5) |
|
|
5% |
T |
T |
|
IIPGA-ITGAM-10262 |
| 10501 |
chr16:31312871 |
5425 A/G |
77 R/H |
G (86) |
A (8) |
|
|
9% |
G |
G |
|
IIPGA-ITGAM-10501 |
| 10581 |
chr16:31312951 |
5505 A/G |
|
G (89) |
A (5) |
|
|
5% |
G |
G |
rs4889643 |
IIPGA-ITGAM-10581 |
| 10627 |
chr16:31312997 |
5551 C/T |
|
T (66) |
C (28) |
|
|
30% |
C |
C |
rs3815801 |
IIPGA-ITGAM-10627 |
| 16133 |
chr16:31318503 |
11057 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-16133 |
| 16403 |
chr16:31318773 |
11327 A/G/T |
|
G (75) |
T (18) |
A (1) |
|
19% |
T |
T |
rs4889644 |
IIPGA-ITGAM-16403 |
| 16509 |
chr16:31318879 |
11433 A/G |
|
G (84) |
A (10) |
|
|
11% |
G |
G |
|
IIPGA-ITGAM-16509 |
| 16584 |
chr16:31318954 |
11508 A/G |
|
A (84) |
G (10) |
|
|
11% |
A |
A |
|
IIPGA-ITGAM-16584 |
| 16660 |
chr16:31319030 |
11584 A/G |
|
G (80) |
A (14) |
|
|
15% |
G |
G |
|
IIPGA-ITGAM-16660 |
| 16670 |
chr16:31319040 |
11594 C/T |
|
C (89) |
T (5) |
|
|
5% |
C |
C |
|
IIPGA-ITGAM-16670 |
| 16813 |
chr16:31319183 |
11737 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-16813 |
| 16854 |
chr16:31319224 |
11778 A/G |
|
G (78) |
A (16) |
|
|
17% |
G |
G |
|
IIPGA-ITGAM-16854 |
| 16980 |
chr16:31319350 |
11904 A/G |
227 T/T |
G (93) |
A (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-16980 |
| 17013 |
chr16:31319383 |
11937 C/G |
|
C (88) |
G (6) |
|
|
6% |
C |
C |
|
IIPGA-ITGAM-17013 |
| 17162 |
chr16:31319532 |
12086 C/T |
|
T (77) |
C (17) |
|
|
18% |
T |
T |
|
IIPGA-ITGAM-17162 |
| 17434 |
chr16:31319804 |
12358 C/G |
|
C (68) |
G (26) |
|
|
28% |
C |
C |
rs8056944 |
IIPGA-ITGAM-17434 |
| 19421 |
chr16:31321791 |
14345 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-19421 |
| 19704 |
chr16:31322074 |
14628 A/C |
|
C (80) |
A (14) |
|
|
15% |
C |
C |
|
IIPGA-ITGAM-19704 |
| 19720 |
chr16:31322090 |
14644 A/G |
|
G (79) |
A (15) |
|
|
16% |
G |
G |
|
IIPGA-ITGAM-19720 |
| 19877 |
chr16:31322247 |
14801 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-19877 |
| 20228 |
chr16:31322598 |
15152 A/T |
|
T (93) |
A (1) |
|
|
1% |
T |
T |
|
IIPGA-ITGAM-20228 |
| 20386 |
chr16:31322756 |
15310 C/G |
|
C (93) |
G (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-20386 |
| 20838 |
chr16:31323208 |
15762 A/T |
|
A (72) |
T (22) |
|
|
23% |
A |
A |
|
IIPGA-ITGAM-20838 |
| 21117 |
chr16:31323487 |
16041 A/T |
|
A (53) |
T (41) |
|
|
44% |
A |
A |
|
IIPGA-ITGAM-21117 |
| 21339 |
chr16:31323709 |
16263 C/T |
|
T (73) |
C (21) |
|
|
22% |
T |
T |
|
IIPGA-ITGAM-21339 |
| 21593 |
chr16:31323963 |
16517 G/T |
|
T (85) |
G (7) |
|
|
7% |
T |
T |
|
IIPGA-ITGAM-21593 |
| 21642 |
chr16:31324012 |
16566 C |
|
C (93) |
X (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-21642 |
| 21811 |
chr16:31324181 |
16735 A/C |
|
A (67) |
C (23) |
|
|
24% |
A |
A |
|
IIPGA-ITGAM-21811 |
| 22471 |
chr16:31324841 |
17395 A/G |
|
G (92) |
A (2) |
|
|
2% |
G |
G |
|
IIPGA-ITGAM-22471 |
| 22549 |
chr16:31324919 |
17473 A/C |
|
A (92) |
C (2) |
|
|
2% |
A |
A |
|
IIPGA-ITGAM-22549 |
| 22604 |
chr16:31324974 |
17528 A/G |
|
G (73) |
A (21) |
|
|
22% |
G |
G |
rs7184339 |
IIPGA-ITGAM-22604 |
| 22756 |
chr16:31325126 |
17680 A/G |
|
G (73) |
A (21) |
|
|
22% |
G |
G |
rs7184677 |
IIPGA-ITGAM-22756 |
| 22799 |
chr16:31325169 |
17723 C/T |
|
C (88) |
T (6) |
|
|
6% |
C |
C |
rs8045430 |
IIPGA-ITGAM-22799 |
| 22817 |
chr16:31325187 |
17741 C/T |
|
T (83) |
C (11) |
|
|
12% |
T |
T |
|
IIPGA-ITGAM-22817 |
| 22888 |
chr16:31325258 |
17812 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-22888 |
| 23086 |
chr16:31325456 |
18010 C/T |
441 M/T |
T (83) |
C (11) |
|
|
12% |
T |
T |
|
IIPGA-ITGAM-23086 |
| 23208 |
chr16:31325578 |
18132 C/T |
|
T (93) |
C (1) |
|
|
1% |
T |
T |
|
IIPGA-ITGAM-23208 |
| 42681 |
chr16:31345051 |
37605 A/C |
|
A (92) |
C (2) |
|
|
2% |
A |
A |
|
IIPGA-ITGAM-42681 |
| 43036 |
chr16:31345406 |
37960 C |
|
C (93) |
X (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-43036 |
| 66345 |
chr16:31368715 |
61269 C/T |
601 L/L |
C (88) |
T (6) |
|
|
6% |
C |
C |
rs8056264 |
IIPGA-ITGAM-66345 |
| 66580 |
chr16:31368950 |
61504 C/T |
648 A/A |
C (87) |
T (7) |
|
|
7% |
C |
C |
rs1143681 |
IIPGA-ITGAM-66580 |
| 66780 |
chr16:31369150 |
61704 C/G |
|
G (92) |
C (2) |
|
|
2% |
G |
G |
|
IIPGA-ITGAM-66780 |
| 67539 |
chr16:31369909 |
62463 A/G |
|
A (92) |
G (2) |
|
|
2% |
A |
A |
|
IIPGA-ITGAM-67539 |
| 67575 |
chr16:31369945 |
62499 C/G |
|
C (91) |
G (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-67575 |
| 69206 |
chr16:31371576 |
64130 G |
|
G (91) |
X (3) |
|
|
3% |
G |
G |
|
IIPGA-ITGAM-69206 |
| 69600 |
chr16:31371966 |
64520 C/T |
|
T (62) |
C (32) |
|
|
34% |
T |
T |
|
IIPGA-ITGAM-69600 |
| 70089 |
chr16:31372455 |
65009 T |
|
T (88) |
X (6) |
|
|
6% |
T |
T |
|
IIPGA-ITGAM-70089 |
| 70138 |
chr16:31372504 |
65058 C/T |
|
T (93) |
C (1) |
|
|
1% |
T |
T |
|
IIPGA-ITGAM-70138 |
| 70195 |
chr16:31372561 |
65115 C/T |
|
T (93) |
C (1) |
|
|
1% |
T |
T |
|
IIPGA-ITGAM-70195 |
| 70213 |
chr16:31372579 |
65133 C/T |
|
C (75) |
T (19) |
|
|
20% |
T |
T |
rs7206295 |
IIPGA-ITGAM-70213 |
| 70217 |
chr16:31372583 |
65137 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-70217 |
| 70413 |
chr16:31372779 |
65333 A/G |
833 T/T |
G (64) |
A (30) |
|
|
32% |
G |
G |
|
IIPGA-ITGAM-70413 |
| 70582 |
chr16:31372948 |
65502 C/T |
858 A/V |
C (81) |
T (13) |
|
|
14% |
C |
C |
rs7201448 |
IIPGA-ITGAM-70582 |
| 71222 |
chr16:31373588 |
66142 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-71222 |
| 71225 |
chr16:31373591 |
66145 C/G |
|
C (93) |
G (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-71225 |
| 71371 |
chr16:31373737 |
66291 A/G |
|
A (65) |
G (29) |
|
|
31% |
A |
A |
|
IIPGA-ITGAM-71371 |
| 71420 |
chr16:31373786 |
66340 A |
|
A (93) |
X (1) |
|
|
1% |
A |
A |
|
IIPGA-ITGAM-71420 |
| 71580 |
chr16:31373946 |
66500 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-71580 |
| 72831 |
chr16:31375197 |
67751 C/G |
|
G (93) |
C (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-72831 |
| 72967 |
chr16:31375333 |
67887 A/T |
|
A (92) |
T (2) |
|
|
2% |
A |
A |
|
IIPGA-ITGAM-72967 |
| 73097 |
chr16:31375463 |
68017 C/G |
|
G (93) |
C (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-73097 |
| 73319 |
chr16:31375685 |
68239 A/G |
|
G (65) |
A (29) |
|
|
31% |
G |
G |
|
IIPGA-ITGAM-73319 |
| 74204 |
chr16:31376570 |
69124 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-74204 |
| 74407 |
chr16:31376773 |
69327 C/T |
|
C (89) |
T (5) |
|
|
5% |
C |
C |
|
IIPGA-ITGAM-74407 |
| 74461 |
chr16:31376827 |
69381 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-74461 |
| 74603 |
chr16:31376969 |
69523 C/T |
|
C (72) |
T (20) |
|
|
21% |
T |
T |
rs4077810 |
IIPGA-ITGAM-74603 |
| 74608 |
chr16:31376974 |
69528 A/G |
|
G (91) |
A (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-74608 |
| 74691 |
chr16:31377057 |
69611 C/T |
|
C (73) |
T (19) |
|
|
21% |
C |
C |
rs7193268 |
IIPGA-ITGAM-74691 |
| 75118 |
chr16:31377484 |
70038 A/C |
1000 T/N |
C (93) |
A (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-75118 |
| 75660 |
chr16:31378026 |
70580 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-75660 |
| 76304 |
chr16:31378668 |
71222 C/T |
|
C (80) |
T (8) |
|
|
9% |
T |
T |
rs7188189 |
IIPGA-ITGAM-76304 |
| 76424 |
chr16:31378788 |
71342 A/C |
|
A (92) |
C (2) |
|
|
2% |
A |
A |
|
IIPGA-ITGAM-76424 |
| 76489 |
chr16:31378853 |
71407 T |
|
X (51) |
T (43) |
|
|
46% |
T |
A |
|
IIPGA-ITGAM-76489 |
| 76704 |
chr16:31379065 |
71619 C/T |
1146 P/S |
C (78) |
T (16) |
|
|
17% |
C |
C |
rs1143678 |
IIPGA-ITGAM-76704 |
| 76889 |
chr16:31379250 |
71804 G |
|
X (52) |
G (42) |
|
|
45% |
G |
A |
rs4990419 |
IIPGA-ITGAM-76889 |
| 76925 |
[not matched: no matching sequences] |
IIPGA-ITGAM-76925 |
| 76944 |
[not matched: no matching sequences] |
IIPGA-ITGAM-76944 |
| 76952 |
chr16:31379303 |
71857 C/T |
|
C (76) |
T (18) |
|
|
19% |
T |
T |
rs4594268 |
IIPGA-ITGAM-76952 |
| 77020 |
chr16:31379371 |
71925 C/T |
|
T (93) |
C (1) |
|
|
1% |
T |
T |
|
IIPGA-ITGAM-77020 |
| 77031 |
chr16:31379382 |
71936 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-77031 |
| 77095 |
chr16:31379446 |
72000 A/G |
|
A (78) |
G (16) |
|
|
17% |
A |
A |
|
IIPGA-ITGAM-77095 |
| 77138 |
chr16:31379489 |
72043 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-77138 |
| 77286 |
chr16:31379637 |
72191 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-77286 |
| 77362 |
chr16:31379713 |
72267 A/G |
|
G (74) |
A (20) |
|
|
21% |
A |
A |
rs3087796 |
IIPGA-ITGAM-77362 |
| 77379 |
chr16:31379730 |
72284 C/G |
|
G (93) |
C (1) |
|
|
1% |
G |
G |
|
IIPGA-ITGAM-77379 |
| 77478 |
chr16:31379829 |
72383 C/T |
|
C (75) |
T (19) |
|
|
20% |
T |
T |
rs4597342 |
IIPGA-ITGAM-77478 |
| 77626 |
chr16:31379977 |
72531 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
|
IIPGA-ITGAM-77626 |
| 77670 |
[not matched: no matching sequences] |
IIPGA-ITGAM-77670 |
| 78023 |
chr16:31380369 |
72923 C/T |
|
T (51) |
C (43) |
|
|
46% |
T |
T |
rs7195945 |
IIPGA-ITGAM-78023 |
| 78169 |
chr16:31380515 |
73069 A/G |
|
A (51) |
G (43) |
|
|
46% |
A |
A |
rs7195915 |
IIPGA-ITGAM-78169 |
| 78336 |
chr16:31380682 |
73236 C/T |
|
T (91) |
C (3) |
|
|
3% |
T |
T |
|
IIPGA-ITGAM-78336 |
|
|
|
| © 2001-2004, Alberto Riva, CHIP |