SNPper - IIPGA PrettyBase Importer Goldenpath: hg16
dbSNP: build 118
Login: pgabot
Home Directory Preferences Feedback Logout
 
Prettybase importer
Gene: IL17R Region searched: chr22:15930412-15975941
Match orientation: Forward Processing time: 12.83 seconds
Total SNPs: 148 Correct: 142

Imported SNPs
Position in
refseq
Absolute
position
Relative
positions
AA
change
All 1 All 2 All 3 All 4 Minor allele
frequency
Base in
refseq
Known base
(from GoldenPath)
Known SNP
(from dbSNP)
Assigned name
3215 chr22:15938625 -1911 C   C (93) X (1)     1% C C   IIPGA-IL17R-3215
3227 chr22:15938637 -1899 G/T   T (91) G (1)     1% T T   IIPGA-IL17R-3227
3402 chr22:15938812 -1724 A/G   G (92) A (2)     2% G G   IIPGA-IL17R-3402
3427 [not matched: no matching sequences] IIPGA-IL17R-3427
3511 chr22:15938920 -1616 A/C   A (93) C (1)     1% A A   IIPGA-IL17R-3511
3623 chr22:15939032 -1504 C/T   T (93) C (1)     1% T T   IIPGA-IL17R-3623
3843 chr22:15939252 -1284 A/T   A (90) T (4)     4% A A   IIPGA-IL17R-3843
3844 chr22:15939253 -1283 G/T   G (87) T (7)     7% G G   IIPGA-IL17R-3844
3881 chr22:15939290 -1246 A/G   A (93) G (1)     1% A A   IIPGA-IL17R-3881
3993 chr22:15939402 -1134 C/G   G (92) C (2)     2% G G   IIPGA-IL17R-3993
4052 chr22:15939461 -1075 A/G   A (79) G (15)     16% G G rs4819553 IIPGA-IL17R-4052
4158 chr22:15939567 -969 A/G   G (79) A (15)     16% A A rs4819958 IIPGA-IL17R-4158
4180 chr22:15939589 -947 A/G   A (79) G (15)     16% G G rs4819554 IIPGA-IL17R-4180
4412 chr22:15939821 -715 A/G   G (91) A (3)     3% G G   IIPGA-IL17R-4412
4473 chr22:15939882 -654 C/T   C (88) T (6)     6% C C   IIPGA-IL17R-4473
4475 chr22:15939884 -652 C/G   C (92) G (2)     2% C C   IIPGA-IL17R-4475
4521 chr22:15939930 -606 C/T   T (93) C (1)     1% T T   IIPGA-IL17R-4521
4863 chr22:15940272 -264 G   G (87) X (1)     1% G G   IIPGA-IL17R-4863
4893 chr22:15940302 -234 A/G   G (82) A (6)     6% G G   IIPGA-IL17R-4893
4921 chr22:15940330 -206 C/G   G (78) C (10)     11% G G   IIPGA-IL17R-4921
5033 chr22:15940442 -94 A/C   C (66) A (28)     30% C C   IIPGA-IL17R-5033
5077 chr22:15940486 -50 C/T   C (79) T (15)     16% T T rs917864 IIPGA-IL17R-5077
5094 chr22:15940503 -33 C/G   C (93) G (1)     1% C C   IIPGA-IL17R-5094
5119 chr22:15940528 -8 C/G   C (79) G (15)     16% G G rs917865 IIPGA-IL17R-5119
5196 chr22:15940605 69 C/G 24 G/R G (93) C (1)     1% G G   IIPGA-IL17R-5196
5351 chr22:15940760 224 G/T   T (76) G (18)     19% G G rs2270241 IIPGA-IL17R-5351
5374 chr22:15940783 247 A/T   A (76) T (18)     19% T T rs2270242 IIPGA-IL17R-5374
5473 chr22:15940882 346 C/G   G (91) C (3)     3% G G   IIPGA-IL17R-5473
5555 chr22:15940964 428 C/T   C (88) T (6)     6% C C   IIPGA-IL17R-5555
5649 chr22:15941058 522 C/T   C (59) T (35)     37% C C rs2270243 IIPGA-IL17R-5649
6019 chr22:15941428 892 C/T   C (87) T (7)     7% C C   IIPGA-IL17R-6019
6151 chr22:15941560 1024 C/G   G (75) C (19)     20% G G rs2241041 IIPGA-IL17R-6151
6166 chr22:15941575 1039 C/G   C (92) G (2)     2% C C   IIPGA-IL17R-6166
6322 chr22:15941731 1195 A/G   G (89) A (5)     5% G G rs5748859 IIPGA-IL17R-6322
6844 chr22:15942253 1717 A/C   A (60) C (34)     36% A A rs2241042 IIPGA-IL17R-6844
6952 chr22:15942361 1825 C/T   C (48) T (46)     49% C C rs2241043 IIPGA-IL17R-6952
6956 chr22:15942365 1829 A/G   G (93) A (1)     1% G G   IIPGA-IL17R-6956
6962 chr22:15942371 1835 A/G   G (91) A (3)     3% G G   IIPGA-IL17R-6962
7043 chr22:15942452 1916 A/G   G (79) A (15)     16% A A rs5994158 IIPGA-IL17R-7043
7092 chr22:15942501 1965 C/T   C (60) T (34)     36% C C rs5748861 IIPGA-IL17R-7092
7330 chr22:15942739 2203 A/G   G (93) A (1)     1% G G   IIPGA-IL17R-7330
7612 chr22:15943021 2485 C/T   T (65) C (29)     31% T T   IIPGA-IL17R-7612
7768 chr22:15943177 2641 A/G   G (90) A (4)     4% G G   IIPGA-IL17R-7768
7806 chr22:15943215 2679 C/T   C (93) T (1)     1% C C   IIPGA-IL17R-7806
7935 chr22:15943344 2808 A/G   G (93) A (1)     1% G G   IIPGA-IL17R-7935
7973 chr22:15943382 2846 A/T   A (93) T (1)     1% A A   IIPGA-IL17R-7973
8100 chr22:15943509 2973 A/C   C (91) A (3)     3% C C   IIPGA-IL17R-8100
8162 chr22:15943571 3035 A/T   T (60) A (34)     36% T T rs5746991 IIPGA-IL17R-8162
8369 [not matched: no matching sequences] IIPGA-IL17R-8369
8421 chr22:15943826 3290 A/G   G (90) A (2)     2% G G   IIPGA-IL17R-8421
8450 chr22:15943855 3319 C/T   C (86) T (6)     6% C C   IIPGA-IL17R-8450
8502 chr22:15943907 3371 C/G   C (89) G (1)     1% C C   IIPGA-IL17R-8502
8545 [not matched: no matching sequences] IIPGA-IL17R-8545
8589 [not matched: no matching sequences] IIPGA-IL17R-8589
8649 chr22:15944053 3517 C/T   C (92) T (2)     2% C C   IIPGA-IL17R-8649
9087 chr22:15944491 3955 C/T   C (91) T (3)     3% C C   IIPGA-IL17R-9087
9143 chr22:15944547 4011 A/T   T (85) A (9)     10% T T   IIPGA-IL17R-9143
9193 chr22:15944597 4061 A/G   G (89) A (3)     3% G G   IIPGA-IL17R-9193
11439 chr22:15946843 6307 A/G   G (89) A (3)     3% G G   IIPGA-IL17R-11439
11544 chr22:15946948 6412 A/G   G (91) A (1)     1% G G   IIPGA-IL17R-11544
11570 [not matched: no matching sequences] IIPGA-IL17R-11570
12092 chr22:15947495 6959 A/G   G (67) A (27)     29% G G rs7288159 IIPGA-IL17R-12092
12102 chr22:15947505 6969 A/G   G (83) A (11)     12% A A rs7291618 IIPGA-IL17R-12102
12165 chr22:15947568 7032 A/G   G (93) A (1)     1% G G   IIPGA-IL17R-12165
12423 chr22:15947826 7290 A/G   A (65) G (29)     31% A A rs1990502 IIPGA-IL17R-12423
12777 chr22:15948180 7644 T   T (81) X (11)     12% T C   IIPGA-IL17R-12777
12810 chr22:15948209 7673 C/T   T (91) C (1)     1% T T   IIPGA-IL17R-12810
16641 chr22:15952040 11504 C/T   C (93) T (1)     1% C C   IIPGA-IL17R-16641
16644 chr22:15952043 11507 A/G   G (93) A (1)     1% G G   IIPGA-IL17R-16644
16712 chr22:15952111 11575 A/G   G (78) A (16)     17% G G   IIPGA-IL17R-16712
16724 chr22:15952123 11587 G/T   G (93) T (1)     1% G G   IIPGA-IL17R-16724
16840 chr22:15952239 11703 G/T   G (93) T (1)     1% G G   IIPGA-IL17R-16840
17163 chr22:15952562 12026 C/T   T (93) C (1)     1% T T   IIPGA-IL17R-17163
17262 chr22:15952661 12125 G/T   G (93) T (1)     1% G G   IIPGA-IL17R-17262
17266 chr22:15952665 12129 C/G   C (93) G (1)     1% C C   IIPGA-IL17R-17266
17304 chr22:15952703 12167 A/G   G (93) A (1)     1% G G   IIPGA-IL17R-17304
17713 chr22:15953112 12576 G/T   G (93) T (1)     1% G G   IIPGA-IL17R-17713
18168 chr22:15953567 13031 A/C   A (88) C (6)     6% A A   IIPGA-IL17R-18168
18191 chr22:15953590 13054 A/C   C (93) A (1)     1% C C   IIPGA-IL17R-18191
18209 chr22:15953608 13072 C/T   T (92) C (2)     2% T T   IIPGA-IL17R-18209
18363 chr22:15953762 13226 A/G   G (93) A (1)     1% G G   IIPGA-IL17R-18363
18650 chr22:15954049 13513 A/G   G (89) A (5)     5% G G   IIPGA-IL17R-18650
19111 chr22:15954510 13974 C/T   C (91) T (3)     3% C C   IIPGA-IL17R-19111
19273 chr22:15954672 14136 T   T (93) X (1)     1% T T   IIPGA-IL17R-19273
19549 chr22:15954948 14412 C/T   C (79) T (15)     16% C C   IIPGA-IL17R-19549
19703 chr22:15955102 14566 A/T   T (86) A (6)     6% T T   IIPGA-IL17R-19703
19761 chr22:15955160 14624 C/T   C (91) T (1)     1% C C   IIPGA-IL17R-19761
19968 chr22:15955367 14831 C/T   T (51) C (41)     44% T T   IIPGA-IL17R-19968
20060 chr22:15955459 14923 A/G   G (93) A (1)     1% G G   IIPGA-IL17R-20060
20202 chr22:15955601 15065 A/C   A (91) C (1)     1% A A   IIPGA-IL17R-20202
20283 chr22:15955682 15146 C/T   T (92) C (2)     2% T T   IIPGA-IL17R-20283
20354 chr22:15955753 15217 C/G   G (88) C (6)     6% G G   IIPGA-IL17R-20354
20368 chr22:15955767 15231 C/T   C (85) T (1)     1% C C   IIPGA-IL17R-20368
20379 chr22:15955778 15242 C/T   C (81) T (5)     5% C C   IIPGA-IL17R-20379
20722 chr22:15956121 15585 A/G   G (80) A (6)     6% G G   IIPGA-IL17R-20722
20993 chr22:15956392 15856 A/C   A (47) C (39)     41% A A rs2241044 IIPGA-IL17R-20993
21174 chr22:15956573 16037 A/G   A (90) G (2)     2% A A   IIPGA-IL17R-21174
21199 chr22:15956598 16062 A/T   A (76) T (14)     15% T T rs1013323 IIPGA-IL17R-21199
21216 chr22:15956615 16079 A/G   A (67) G (23)     24% A A rs2241045 IIPGA-IL17R-21216
21317 chr22:15956716 16180 C/T   C (87) T (3)     3% C C   IIPGA-IL17R-21317
21408 chr22:15956807 16271 A/G   G (89) A (1)     1% G G   IIPGA-IL17R-21408
21718 chr22:15957117 16581 C/T   C (89) T (1)     1% C C   IIPGA-IL17R-21718
21931 chr22:15957330 16794 C/T   C (79) T (15)     16% C C   IIPGA-IL17R-21931
21943 chr22:15957342 16806 C/T   C (84) T (10)     11% C C   IIPGA-IL17R-21943
22032 chr22:15957431 16895 G/T   G (93) T (1)     1% G G   IIPGA-IL17R-22032
22127 chr22:15957526 16990 C   C (92) X (2)     2% C C   IIPGA-IL17R-22127
22141 chr22:15957540 17004 C/T   C (93) T (1)     1% C C   IIPGA-IL17R-22141
22167 chr22:15957566 17030 A/G   G (91) A (3)     3% G G   IIPGA-IL17R-22167
22483 chr22:15957882 17346 C/T   C (93) T (1)     1% C C   IIPGA-IL17R-22483
22615 chr22:15958014 17478 G/T   G (93) T (1)     1% G G   IIPGA-IL17R-22615
22656 [not matched: no matching sequences] IIPGA-IL17R-22656
22948 chr22:15958346 17810 G   G (81) X (13)     14% G G   IIPGA-IL17R-22948
23142 chr22:15958540 18004 C/T   T (93) C (1)     1% T T   IIPGA-IL17R-23142
24780 chr22:15960178 19642 C/G 285 P/P C (92) G (2)     2% C C   IIPGA-IL17R-24780
24863 chr22:15960261 19725 G   G (93) X (1)     1% G G   IIPGA-IL17R-24863
24964 chr22:15960362 19826 C/G   G (83) C (11)     12% G G rs721930 IIPGA-IL17R-24964
25288 chr22:15960686 20150 A/G   G (93) A (1)     1% G G   IIPGA-IL17R-25288
25627 chr22:15961025 20489 C/T   T (70) C (18)     19% C C rs2241046 IIPGA-IL17R-25627
25647 chr22:15961045 20509 A/G 314 P/P G (87) A (1)     1% G G   IIPGA-IL17R-25647
25739 chr22:15961137 20601 C/G   C (52) G (38)     40% C C rs2241047 IIPGA-IL17R-25739
25751 chr22:15961149 20613 A/G   G (83) A (7)     7% G G   IIPGA-IL17R-25751
25876 chr22:15961274 20738 T   T (52) X (36)     38% T T   IIPGA-IL17R-25876
26268 chr22:15961666 21130 A/G   G (91) A (3)     3% G G   IIPGA-IL17R-26268
26413 chr22:15961811 21275 G/T   G (93) T (1)     1% G G   IIPGA-IL17R-26413
26591 chr22:15961989 21453 C/T   C (90) T (4)     4% C C   IIPGA-IL17R-26591
28168 chr22:15963566 23030 C/T   T (91) C (1)     1% T T   IIPGA-IL17R-28168
28308 chr22:15963706 23170 G/T   T (77) G (15)     16% T T   IIPGA-IL17R-28308
28365 chr22:15963763 23227 C/T 367 A/V C (66) T (26)     28% C C rs879577 IIPGA-IL17R-28365
28402 chr22:15963800 23264 A/G 379 K/K G (76) A (16)     17% G G rs879576 IIPGA-IL17R-28402
28453 chr22:15963851 23315 A/G 396 L/L G (83) A (1)     1% G G rs2229151 IIPGA-IL17R-28453
28672 chr22:15964070 23534 C/T 469 C/C C (93) T (1)     1% C C   IIPGA-IL17R-28672
28723 chr22:15964121 23585 C/T 486 I/I C (78) T (16)     17% C C rs879575 IIPGA-IL17R-28723
28758 chr22:15964156 23620 C/T 498 T/I C (93) T (1)     1% C C   IIPGA-IL17R-28758
28950 chr22:15964348 23812 A/C 562 P/Q C (93) A (1)     1% C C   IIPGA-IL17R-28950
29012 chr22:15964410 23874 C/G 583 D/H G (93) C (1)     1% G G   IIPGA-IL17R-29012
29084 chr22:15964482 23946 A/G 607 E/K G (93) A (1)     1% G G   IIPGA-IL17R-29084
29336 chr22:15964734 24198 A/G 691 A/T G (81) A (13)     14% G G   IIPGA-IL17R-29336
29425 chr22:15964823 24287 C/T 720 P/P C (64) T (24)     26% C C rs4819555 IIPGA-IL17R-29425
29463 chr22:15964861 24325 C/G 733 P/R C (87) G (1)     1% C C   IIPGA-IL17R-29463
29560 chr22:15964958 24422 A/G 765 Q/Q G (87) A (1)     1% G G   IIPGA-IL17R-29560
29671 chr22:15965069 24533 A/G 802 P/P G (87) A (1)     1% G G   IIPGA-IL17R-29671
29900 chr22:15965298 24762 C/T   T (63) C (25)     27% T T rs1468488 IIPGA-IL17R-29900
30013 chr22:15965411 24875 C/G   G (87) C (1)     1% G G   IIPGA-IL17R-30013
30115 chr22:15965513 24977 A/C   A (91) C (1)     1% A A rs5994164 IIPGA-IL17R-30115
30245 chr22:15965643 25107 A/G   A (64) G (28)     30% G G rs2895332 IIPGA-IL17R-30245
30300 chr22:15965698 25162 C/T   T (52) C (40)     43% C C rs3179921 IIPGA-IL17R-30300
30665 chr22:15966063 25527 A   A (86) X (6)     6% A A   IIPGA-IL17R-30665
30765 chr22:15966163 25627 C/T   C (91) T (1)     1% C C   IIPGA-IL17R-30765
© 2001-2004, Alberto Riva, CHIP