 |
SNPper - IIPGA PrettyBase Importer |
Goldenpath: hg16
dbSNP: build 118
Login: pgabot |
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| Prettybase importer |
| Gene: |
CCL24 |
Region searched: |
chr7:75043203-75065122 |
| Match orientation: |
Reverse complemented |
Processing time: |
0.81 seconds |
| Total SNPs: |
34 |
Correct: |
34 |
|
|
| Imported SNPs |
Position in
refseq |
Absolute
position |
Relative
positions |
AA
change |
All 1 |
All 2 |
All 3 |
All 4 |
Minor allele
frequency |
Base in
refseq |
Known base
(from GoldenPath) |
Known SNP
(from dbSNP) |
Assigned name |
| 4031 |
chr7:75056092 |
-970 A/G |
|
A (90) |
G (4) |
|
|
4% |
A |
A |
IIPGA-CCL24-4031 |
IIPGA-CCL24-4031 |
| 4073 |
chr7:75056050 |
-928 C/T |
|
C (90) |
T (4) |
|
|
4% |
C |
C |
IIPGA-CCL24-4073 |
IIPGA-CCL24-4073 |
| 4746 |
chr7:75055377 |
-255 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
IIPGA-CCL24-4746 |
IIPGA-CCL24-4746 |
| 5084 |
chr7:75055039 |
83 C/T |
|
C (91) |
T (1) |
|
|
1% |
C |
C |
IIPGA-CCL24-5084 |
IIPGA-CCL24-5084 |
| 5101 |
chr7:75055022 |
100 A/G |
|
A (91) |
G (1) |
|
|
1% |
A |
A |
IIPGA-CCL24-5101 |
IIPGA-CCL24-5101 |
| 5179 |
chr7:75054944 |
178 C/T |
|
T (48) |
C (46) |
|
|
49% |
T |
T |
rs2302004 |
IIPGA-CCL24-5179 |
| 5275 |
chr7:75054848 |
274 C/T |
|
C (63) |
T (31) |
|
|
33% |
C |
C |
rs2302005 |
IIPGA-CCL24-5275 |
| 5304 |
chr7:75054819 |
303 A/C |
|
A (65) |
C (29) |
|
|
31% |
A |
A |
rs2302006 |
IIPGA-CCL24-5304 |
| 5311 |
chr7:75054812 |
310 C/T |
|
C (90) |
T (4) |
|
|
4% |
C |
C |
IIPGA-CCL24-5311 |
IIPGA-CCL24-5311 |
| 5447 |
chr7:75054676 |
446 C/T |
|
T (59) |
C (35) |
|
|
37% |
T |
T |
rs3815261 |
IIPGA-CCL24-5447 |
| 5627 |
chr7:75054496 |
626 A/G |
|
G (84) |
A (10) |
|
|
11% |
G |
G |
IIPGA-CCL24-5627 |
IIPGA-CCL24-5627 |
| 5740 |
chr7:75054383 |
739 A/G |
|
G (91) |
A (3) |
|
|
3% |
G |
G |
IIPGA-CCL24-5740 |
IIPGA-CCL24-5740 |
| 5786 |
chr7:75054337 |
785 C |
|
C (80) |
X (14) |
|
|
15% |
C |
C |
IIPGA-CCL24-5786 |
IIPGA-CCL24-5786 |
| 5815 |
chr7:75054308 |
814 C/G |
|
C (93) |
G (1) |
|
|
1% |
C |
C |
IIPGA-CCL24-5815 |
IIPGA-CCL24-5815 |
| 5831 |
chr7:75054292 |
830 A/C |
|
C (86) |
A (8) |
|
|
9% |
C |
C |
IIPGA-CCL24-5831 |
IIPGA-CCL24-5831 |
| 5854 |
chr7:75054269 |
853 C/T |
|
C (91) |
T (3) |
|
|
3% |
C |
C |
IIPGA-CCL24-5854 |
IIPGA-CCL24-5854 |
| 5894 |
chr7:75054229 |
893 A/G |
|
G (92) |
A (2) |
|
|
2% |
G |
G |
IIPGA-CCL24-5894 |
IIPGA-CCL24-5894 |
| 6048 |
chr7:75054075 |
1047 C/T |
|
C (91) |
T (1) |
|
|
1% |
C |
C |
IIPGA-CCL24-6048 |
IIPGA-CCL24-6048 |
| 6053 |
chr7:75054070 |
1052 G/T |
|
T (72) |
G (18) |
|
|
19% |
T |
T |
IIPGA-CCL24-6053 |
IIPGA-CCL24-6053 |
| 6109 |
chr7:75054014 |
1108 G/T |
|
T (67) |
G (19) |
|
|
20% |
T |
T |
IIPGA-CCL24-6109 |
IIPGA-CCL24-6109 |
| 6125 |
chr7:75053998 |
1124 C/G |
|
C (73) |
G (19) |
|
|
20% |
C |
C |
IIPGA-CCL24-6125 |
IIPGA-CCL24-6125 |
| 6170 |
chr7:75053953 |
1169 C/G |
|
C (75) |
G (19) |
|
|
20% |
C |
C |
IIPGA-CCL24-6170 |
IIPGA-CCL24-6170 |
| 6240 |
chr7:75053883 |
1239 C/T |
|
T (74) |
C (20) |
|
|
21% |
T |
T |
IIPGA-CCL24-6240 |
IIPGA-CCL24-6240 |
| 6272 |
chr7:75053851 |
1271 A/G |
|
A (66) |
G (28) |
|
|
30% |
A |
A |
rs4732416 |
IIPGA-CCL24-6272 |
| 6387 |
chr7:75053736 |
1386 A/G |
|
G (87) |
A (7) |
|
|
7% |
G |
G |
IIPGA-CCL24-6387 |
IIPGA-CCL24-6387 |
| 6520 |
chr7:75053603 |
1519 A/G |
|
G (81) |
A (13) |
|
|
14% |
G |
G |
IIPGA-CCL24-6520 |
IIPGA-CCL24-6520 |
| 6536 |
chr7:75053587 |
1535 C/T |
|
C (91) |
T (3) |
|
|
3% |
C |
C |
IIPGA-CCL24-6536 |
IIPGA-CCL24-6536 |
| 6864 |
chr7:75053259 |
1863 A/G |
|
G (91) |
A (3) |
|
|
3% |
G |
G |
IIPGA-CCL24-6864 |
IIPGA-CCL24-6864 |
| 6888 |
chr7:75053235 |
1887 C/G |
|
C (91) |
G (3) |
|
|
3% |
C |
C |
IIPGA-CCL24-6888 |
IIPGA-CCL24-6888 |
| 6923 |
chr7:75053200 |
1922 A/C |
|
C (50) |
A (44) |
|
|
47% |
C |
C |
IIPGA-CCL24-6923 |
IIPGA-CCL24-6923 |
| 6926 |
chr7:75053197 |
1925 A/G |
|
G (51) |
A (43) |
|
|
46% |
G |
G |
IIPGA-CCL24-6926 |
IIPGA-CCL24-6926 |
| 7005 |
chr7:75053118 |
2004 G/T |
|
G (93) |
T (1) |
|
|
1% |
G |
G |
IIPGA-CCL24-7005 |
IIPGA-CCL24-7005 |
| 7094 |
chr7:75053029 |
2093 C/T |
|
C (92) |
T (2) |
|
|
2% |
C |
C |
IIPGA-CCL24-7094 |
IIPGA-CCL24-7094 |
| 7158 |
chr7:75052965 |
2157 A/T |
|
T (89) |
A (3) |
|
|
3% |
T |
T |
IIPGA-CCL24-7158 |
IIPGA-CCL24-7158 |
|
|
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| © 2001-2004, Alberto Riva, CHIP |