SNPper - IIPGA PrettyBase Importer Goldenpath: hg17
dbSNP: build 123
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Prettybase importer
Gene: CARD15 Region searched: chr16:49,278,551-49,334,488
Match orientation: Forward Processing time: 4.79 seconds
Total SNPs: 53 Correct: 52

Imported SNPs
Position in
refseq		 Absolute
position		 Relative
positions		 AA
change		 All 1 All 2 All 3 All 4 Minor allele
frequency		 Base in
refseq		 Known base
(from GoldenPath)		 Known SNP
(from dbSNP)		 Assigned name
1540 chr16:49287589 -1067 G/T   G (181) T (1)     1% G G rs5743259 IIPGA-CARD15-1540
1599 chr16:49287648 -1008 C/T   C (181) T (1)     1% C C rs5743260 IIPGA-CARD15-1599
1681 chr16:49287730 -926 A/G   G (138) A (44)     24% A G rs2066850 IIPGA-CARD15-1681
1898 chr16:49287947 -709 A/G   G (130) A (54)     29% G G rs4785224 IIPGA-CARD15-1898
2022 chr16:49288071 -585 A/G   G (183) A (1)     1% G G rs5743261 IIPGA-CARD15-2022
2244 chr16:49288293 -363 C/G   C (183) G (1)     1% C C rs5743262 IIPGA-CARD15-2244
2317 chr16:49288366 -290 C/T   T (181) C (5)     3% T T rs5743263 IIPGA-CARD15-2317
2474 chr16:49288523 -133 C/T   T (184) C (2)     1% T T rs5743264 IIPGA-CARD15-2474
2511 chr16:49288560 -96 T   T (172)         T T   IIPGA-CARD15-2511
2548 chr16:49288597 -59 A/G   G (134) A (52)     28% G G rs5743266 IIPGA-CARD15-2548
2833 chr16:49288881 225 C/T   C (181) T (1)     1% C C rs5743267 IIPGA-CARD15-2833
4827 chr16:49290875 2219 G/T   G (126) T (40)     22% G G rs2076753 IIPGA-CARD15-4827
5312 chr16:49291360 2704 C/G 178 S/S C (130) G (56)     30% C C rs2067085 IIPGA-CARD15-5312
5422 chr16:49291470 2814 A/G   G (120) A (66)     35% A A rs2111235 IIPGA-CARD15-5422
5486 chr16:49291534 2878 A/G   A (120) G (66)     35% G G rs2111234 IIPGA-CARD15-5486
13092 chr16:49299140 10484 A/G   G (185) A (1)     1% G G rs5743268 IIPGA-CARD15-13092
13311 chr16:49299359 10703 C/T 211 A/A C (185) T (1)     1% C C rs5743269 IIPGA-CARD15-13311
13515 chr16:49299563 10907 A/G   G (183) A (3)     2% G G rs5743270 IIPGA-CARD15-13515
16077 chr16:49302125 13469 C/T 268 P/S C (146) T (40)     22% C C rs2066842 IIPGA-CARD15-16077
16141 chr16:49302189 13533 A/G 289 N/S A (184) G (2)     1% A A rs5743271 IIPGA-CARD15-16141
16330 chr16:49302378 13722 A/G 352 H/R A (185) G (1)     1% A A rs5743272 IIPGA-CARD15-16330
16469 chr16:49302517 13861 C/T 398 T/T C (185) T (1)     1% C C rs5743273 IIPGA-CARD15-16469
16652 chr16:49302700 14044 C/T 459 R/R C (145) T (41)     22% C C rs2066843 IIPGA-CARD15-16652
16728 chr16:49302776 14120 C/T 485 L/L C (183) T (3)     2% C C rs5743274 IIPGA-CARD15-16728
17036 chr16:49303084 14428 G/T 587 R/R T (129) G (57)     31% T T rs1861759 IIPGA-CARD15-17036
17278 chr16:49303326 14670 C/T 668 P/L C (184) T (2)     1% C C rs5743275 IIPGA-CARD15-17278
17325 chr16:49303373 14717 C/T 684 R/W C (185) T (1)     1% C C rs5743276 IIPGA-CARD15-17325
17379 chr16:49303427 14771 C/T 702 R/W C (177) T (9)     5% C C rs2066844 IIPGA-CARD15-17379
17382 chr16:49303430 14774 C/T 703 R/C C (185) T (1)     1% C C rs5743277 IIPGA-CARD15-17382
17449 chr16:49303497 14841 C/G 725 A/G C (184) G (2)     1% C C rs5743278 IIPGA-CARD15-17449
17644 chr16:49303692 15036 A/G 790 R/Q G (183) A (3)     2% G G rs5743279 IIPGA-CARD15-17644
17651 chr16:49303699 15043 C/T 792 P/P C (185) T (1)     1% C C rs5743280 IIPGA-CARD15-17651
17982 chr16:49304030 15374 C/T   C (185) T (1)     0% C C rs5743281 IIPGA-CARD15-17982
18000 [not matched: no matching sequences] IIPGA-CARD15-18000
22214 chr16:49308261 19605 C/T   T (184) C (2)     1% T T rs5743284 IIPGA-CARD15-22214
22245 chr16:49308292 19636 G/T   G (184) T (2)     1% G G rs5743285 IIPGA-CARD15-22245
25531 chr16:49311578 22922 C/T   C (181) T (1)     1% C C rs5743286 IIPGA-CARD15-25531
25607 chr16:49311654 22998 C/G   G (180) C (2)     1% G G rs5743287 IIPGA-CARD15-25607
28229 chr16:49314275 25619 C/T   C (164) T (22)     12% C C rs5743289 IIPGA-CARD15-28229
28336 chr16:49314382 25726 A/G   A (145) G (41)     22% A A rs2076756 IIPGA-CARD15-28336
28643 chr16:49314689 26033 C/T   C (185) T (1)     1% C C rs5743290 IIPGA-CARD15-28643
28731 chr16:49314777 26121 A/G 955 V/I G (177) A (7)     4% G G rs5743291 IIPGA-CARD15-28731
31002 chr16:49317048 28392 A/T   A (100) T (56)     30% A A rs1077861 IIPGA-CARD15-31002
31186 chr16:49317232 28576 A/T   T (171) A (13)     3% T T rs5743292 IIPGA-CARD15-31186
35337 chr16:49321382 32726 C/T   C (185) T (1)     1% C C rs5743294 IIPGA-CARD15-35337
37119 chr16:49323164 34508 G/T 1019 R/L G (181) T (1)     1% G G rs5743295 IIPGA-CARD15-37119
37206 chr16:49323251 34595 A/G   G (183) A (1)     1% G G rs5743296 IIPGA-CARD15-37206
37583 chr16:49323628 34972 A/C   A (103) C (83)     45% A A rs3135499 IIPGA-CARD15-37583
37707 chr16:49323752 35096 C/T   C (184) T (2)     1% C C rs5743297 IIPGA-CARD15-37707
37926 chr16:49323971 35315 G/T   G (181) T (1)     1% G G rs5743298 IIPGA-CARD15-37926
38209 chr16:49324254 35598 C/T   C (185) T (1)     1% C C rs5743299 IIPGA-CARD15-38209
38342 chr16:49324387 35731 A/G   G (104) A (82)     44% G G rs3135500 IIPGA-CARD15-38342
38575 chr16:49324620 35964 A/C   C (179) A (5)     3% C C rs5743300 IIPGA-CARD15-38575
© 2001-2004, Alberto Riva, CHIP