SNPper - IIPGA PrettyBase Importer Goldenpath: hg16
dbSNP: build 118
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Gene: BPI
Region searched: chr20:37608014-37661334
Match orientation: Forward
Processing time: 3.85 seconds

SNPs:

Position in
consensus
Absolute
position
Relative
positions
All 1 All 2 All 3 All 4 Minor allele
frequency
Base in
consensus
Known base
(from GoldenPath)
Known SNP
(from dbSNP)
Assigned name
1713 chr20:37617202 -841 G/T G (179) T (1)     1% G G rs5743492 IIPGA-BPI-1713
1715 chr20:37617204 -839 A/C A (178) C (2)     1% A A rs5743493 IIPGA-BPI-1715
2114 chr20:37617603 -440 A/G A (183) G (1)     1% A A rs5743494 IIPGA-BPI-2114
2235 chr20:37617724 -319 A/G G (119) A (65)     35% A A rs3746472 IIPGA-BPI-2235
2322 chr20:37617811 -232 A/G G (183) A (1)     1% G G rs5743495 IIPGA-BPI-2322
2372 chr20:37617861 -182 G/T G (183) T (1)     1% G G rs5743496 IIPGA-BPI-2372
2491 chr20:37617980 -63 C/G C (100) G (78)     42% G G rs1341022 IIPGA-BPI-2491
2587 chr20:37618076 33 A/G G (175) A (1)     1% G G rs5743497 IIPGA-BPI-2587
2588 chr20:37618077 34 C/T C (175) T (1)     1% C C rs5743498 IIPGA-BPI-2588
2600 chr20:37618089 46 C/T T (100) C (76)     41% C C rs1341023 IIPGA-BPI-2600
2616 chr20:37618105 62 C/G C (93) G (83)     45% G G rs1341024 IIPGA-BPI-2616
2738 chr20:37618227 184 C/G C (128) G (48)     26% C C rs5741798 IIPGA-BPI-2738
6246 chr20:37621676 3633 A/G G (175) A (1)     1% G G rs5741799 IIPGA-BPI-6246
6272 chr20:37621702 3659 C/T C (165) T (9)     5% C C rs5743499 IIPGA-BPI-6272
6279 chr20:37621709 3666 A/G A (92) G (84)     45% G G rs5741800 IIPGA-BPI-6279
7258 chr20:37622675 4632 A/G G (111) A (71)     38% G G rs2066252 IIPGA-BPI-7258
7354 chr20:37622771 4728 C/T C (181) T (1)     1% C C rs5743500 IIPGA-BPI-7354
7410 chr20:37622827 4784 A/G G (181) A (1)     1% G G rs5743501 IIPGA-BPI-7410
7443 chr20:37622860 4817 C/T C (180) T (2)     1% C C rs5743502 IIPGA-BPI-7443
7491 chr20:37622908 4865 A/G G (178) A (4)     2% G G rs5743503 IIPGA-BPI-7491
7747 chr20:37623163 5120 A/G G (170) A (2)     1% G G rs5743504 IIPGA-BPI-7747
8803 chr20:37624201 6158 A/G G (177) A (1)     1% G G rs5743505 IIPGA-BPI-8803
8909 chr20:37624307 6264 C/T T (167) C (11)     6% T T rs5741801 IIPGA-BPI-8909
8955 chr20:37624353 6310 C/G G (178) C (2)     1% G G rs5743506 IIPGA-BPI-8955
9083 chr20:37624481 6438 C/G G (165) C (15)     8% G G rs5743507 IIPGA-BPI-9083
9218 chr20:37624616 6573 C/T C (152) T (26)     14% T T rs1891032 IIPGA-BPI-9218
10059 chr20:37625443 7400 C/G G (177) C (1)     1% G G rs5743508 IIPGA-BPI-10059
10214 chr20:37625598 7555 A/G A (156) G (22)     12% A A rs3746476 IIPGA-BPI-10214
10359 chr20:37625743 7700 C/T C (169) T (9)     5% C C rs5743509 IIPGA-BPI-10359
16923 chr20:37632184 14141 A/G G (185) A (1)     1% G G rs5741802 IIPGA-BPI-16923
17016 chr20:37632277 14234 A/G G (102) A (82)     44% G G rs4358188 IIPGA-BPI-17016
17259 chr20:37632520 14477 A/G G (103) A (83)     45% A A rs5741803 IIPGA-BPI-17259
18646 chr20:37633886 15843 C/T T (172) C (14)     8% T T rs5743510 IIPGA-BPI-18646
19123 chr20:37634363 16320 C/G G (162) C (20)     11% G G rs6123586 IIPGA-BPI-19123
22514 chr20:37637689 19646 C/G C (179) G (1)     1% C C rs5743512 IIPGA-BPI-22514
22596 chr20:37637771 19728 C/T C (165) T (15)     8% C C rs5741804 IIPGA-BPI-22596
22679 chr20:37637854 19811 A/C A (175) C (5)     3% A A rs5743513 IIPGA-BPI-22679
22708 chr20:37637883 19840 A/G G (179) A (1)     1% G G rs5743514 IIPGA-BPI-22708
22755 chr20:37637930 19887 A/C C (179) A (1)     1% C C rs5743515 IIPGA-BPI-22755
22865 chr20:37638040 19997 A/G A (177) G (3)     2% A A rs5741805 IIPGA-BPI-22865
22967 chr20:37638142 20099 A/T T (179) A (1)     1% T T rs5743516 IIPGA-BPI-22967
23356 chr20:37638526 20483 C/T C (99) T (77)     41% C C rs5741806 IIPGA-BPI-23356
23377 chr20:37638547 20504 C/G C (176) G (6)     3% C C rs5743517 IIPGA-BPI-23377
23378 chr20:37638548 20505 C/G C (180) G (2)     1% C C rs5741807 IIPGA-BPI-23378
23397 chr20:37638567 20524 A/T A (176) T (6)     3% A A rs5743518 IIPGA-BPI-23397
23654 chr20:37638824 20781 C/G G (177) C (5)     3% G G rs5743519 IIPGA-BPI-23654
23700 chr20:37638870 20827 A/G/T G (170) A (10) T (2)   5% G G rs5743520 IIPGA-BPI-23700
23754 chr20:37638924 20881 A/T A (177) T (5)     3% A A rs5743521 IIPGA-BPI-23754
23758 chr20:37638928 20885 G/T G (181) T (1)     1% G G rs5743522 IIPGA-BPI-23758
24861 chr20:37640017 21974 A/G G (176) A (6)     3% G G rs5741808 IIPGA-BPI-24861
24997 chr20:37640153 22110 C/T C (180) T (2)     1% C C rs5743523 IIPGA-BPI-24997
25063 chr20:37640219 22176 A/G G (181) A (1)     1% G G rs5743524 IIPGA-BPI-25063
25121 chr20:37640277 22234 G/T G (180) T (2)     1% G G rs5743525 IIPGA-BPI-25121
26126 chr20:37641268 23225 A/G G (176) A (2)     1% G G rs5743526 IIPGA-BPI-26126
26306 chr20:37641448 23405 C/T C (176) T (2)     1% C C rs5743527 IIPGA-BPI-26306
26313 chr20:37641455 23412 A/G A (169) G (9)     5% A A rs5741809 IIPGA-BPI-26313
26387 chr20:37641529 23486 C/T C (169) T (9)     5% C C rs5741810 IIPGA-BPI-26387
26396 chr20:37641538 23495 C/T T (169) C (9)     5% T T rs5743528 IIPGA-BPI-26396
26412 chr20:37641554 23511 C/T T (169) C (9)     5% T T rs5743529 IIPGA-BPI-26412
26484 chr20:37641626 23583 C/T C (169) T (9)     5% C C rs5743530 IIPGA-BPI-26484
26503 chr20:37641645 23602 A/G A (177) G (1)     1% A A rs5743531 IIPGA-BPI-26503
26602 chr20:37641744 23701 A/G G (171) A (7)     4% G G rs5743532 IIPGA-BPI-26602
29660 chr20:37644747 26704 A/G G (99) A (85)     46% G G rs5743533 IIPGA-BPI-29660
29695 chr20:37644782 26739 A/G G (93) A (91)     49% A A rs5743534 IIPGA-BPI-29695
29778 chr20:37644865 26822 G/T T (177) G (7)     4% T T rs5743535 IIPGA-BPI-29778
29888 chr20:37644975 26932 A/G G (178) A (6)     3% G G rs5743536 IIPGA-BPI-29888
29907 chr20:37644994 26951 C/T C (177) T (7)     4% C C rs5743537 IIPGA-BPI-29907
29908 chr20:37644995 26952 A/G G (182) A (2)     1% G A rs2425357 IIPGA-BPI-29908
29918 chr20:37645005 26962 C/T T (183) C (1)     1% T T rs5743538 IIPGA-BPI-29918
29924 chr20:37645011 26968 A/G G (179) A (5)     3% G G rs5743539 IIPGA-BPI-29924
33051 chr20:37648082 30039 C/T T (181) C (1)     1% T T rs5743540 IIPGA-BPI-33051
33065 chr20:37648096 30053 A/G G (101) A (81)     44% A A rs2275954 IIPGA-BPI-33065
33177 chr20:37648208 30165 C/T C (181) T (1)     1% C C rs2275955 IIPGA-BPI-33177
33178 chr20:37648209 30166 A/G G (181) A (1)     1% G G rs2275956 IIPGA-BPI-33178
33188 chr20:37648219 30176 A/G G (180) A (2)     1% G G rs5743541 IIPGA-BPI-33188
33316 chr20:37648347 30304 C/T T (181) C (1)     1% T T rs2425359 IIPGA-BPI-33316
34413 chr20:37649431 31388 A/G A (165) G (1)     1% A A rs5743542 IIPGA-BPI-34413
34466 chr20:37649484 31441 C/T C (163) T (1)     1% C C rs5743543 IIPGA-BPI-34466
34582 chr20:37649600 31557 C/G G (163) C (1)     1% G G rs5743544 IIPGA-BPI-34582
34600 chr20:37649618 31575 A/G A (161) G (3)     2% A A rs5743545 IIPGA-BPI-34600
34608 chr20:37649626 31583 C/T T (161) C (3)     2% T T rs5743546 IIPGA-BPI-34608
34824 chr20:37649842 31799 A/C C (163) A (1)     1% C C rs5743547 IIPGA-BPI-34824
35883 chr20:37650884 32841 C/T T (182) C (2)     1% T T rs5743548 IIPGA-BPI-35883
35997 chr20:37650998 32955 C/G G (185) C (1)     1% G G rs5743549 IIPGA-BPI-35997
36045 chr20:37651046 33003 A/G G (118) A (68)     37% A A rs1131847 IIPGA-BPI-36045
36334 chr20:37651335 33292 A/G A (117) G (69)     37% G G rs2256754 IIPGA-BPI-36334
© 2001-2004, Alberto Riva, CHIP