 |
SNPper - IIPGA PrettyBase Importer |
Goldenpath: hg16 dbSNP: build 118 Login: pgabot |
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SNPs:
Position in consensus |
Absolute position |
Relative positions |
All 1 |
All 2 |
All 3 |
All 4 |
Minor allele frequency |
Base in consensus |
Known base (from GoldenPath) |
Known SNP (from dbSNP) |
Assigned name |
| 1713 |
chr20:37617202 |
-841 G/T |
G (179) |
T (1) |
|
|
1% |
G |
G |
rs5743492 |
IIPGA-BPI-1713 |
| 1715 |
chr20:37617204 |
-839 A/C |
A (178) |
C (2) |
|
|
1% |
A |
A |
rs5743493 |
IIPGA-BPI-1715 |
| 2114 |
chr20:37617603 |
-440 A/G |
A (183) |
G (1) |
|
|
1% |
A |
A |
rs5743494 |
IIPGA-BPI-2114 |
| 2235 |
chr20:37617724 |
-319 A/G |
G (119) |
A (65) |
|
|
35% |
A |
A |
rs3746472 |
IIPGA-BPI-2235 |
| 2322 |
chr20:37617811 |
-232 A/G |
G (183) |
A (1) |
|
|
1% |
G |
G |
rs5743495 |
IIPGA-BPI-2322 |
| 2372 |
chr20:37617861 |
-182 G/T |
G (183) |
T (1) |
|
|
1% |
G |
G |
rs5743496 |
IIPGA-BPI-2372 |
| 2491 |
chr20:37617980 |
-63 C/G |
C (100) |
G (78) |
|
|
42% |
G |
G |
rs1341022 |
IIPGA-BPI-2491 |
| 2587 |
chr20:37618076 |
33 A/G |
G (175) |
A (1) |
|
|
1% |
G |
G |
rs5743497 |
IIPGA-BPI-2587 |
| 2588 |
chr20:37618077 |
34 C/T |
C (175) |
T (1) |
|
|
1% |
C |
C |
rs5743498 |
IIPGA-BPI-2588 |
| 2600 |
chr20:37618089 |
46 C/T |
T (100) |
C (76) |
|
|
41% |
C |
C |
rs1341023 |
IIPGA-BPI-2600 |
| 2616 |
chr20:37618105 |
62 C/G |
C (93) |
G (83) |
|
|
45% |
G |
G |
rs1341024 |
IIPGA-BPI-2616 |
| 2738 |
chr20:37618227 |
184 C/G |
C (128) |
G (48) |
|
|
26% |
C |
C |
rs5741798 |
IIPGA-BPI-2738 |
| 6246 |
chr20:37621676 |
3633 A/G |
G (175) |
A (1) |
|
|
1% |
G |
G |
rs5741799 |
IIPGA-BPI-6246 |
| 6272 |
chr20:37621702 |
3659 C/T |
C (165) |
T (9) |
|
|
5% |
C |
C |
rs5743499 |
IIPGA-BPI-6272 |
| 6279 |
chr20:37621709 |
3666 A/G |
A (92) |
G (84) |
|
|
45% |
G |
G |
rs5741800 |
IIPGA-BPI-6279 |
| 7258 |
chr20:37622675 |
4632 A/G |
G (111) |
A (71) |
|
|
38% |
G |
G |
rs2066252 |
IIPGA-BPI-7258 |
| 7354 |
chr20:37622771 |
4728 C/T |
C (181) |
T (1) |
|
|
1% |
C |
C |
rs5743500 |
IIPGA-BPI-7354 |
| 7410 |
chr20:37622827 |
4784 A/G |
G (181) |
A (1) |
|
|
1% |
G |
G |
rs5743501 |
IIPGA-BPI-7410 |
| 7443 |
chr20:37622860 |
4817 C/T |
C (180) |
T (2) |
|
|
1% |
C |
C |
rs5743502 |
IIPGA-BPI-7443 |
| 7491 |
chr20:37622908 |
4865 A/G |
G (178) |
A (4) |
|
|
2% |
G |
G |
rs5743503 |
IIPGA-BPI-7491 |
| 7747 |
chr20:37623163 |
5120 A/G |
G (170) |
A (2) |
|
|
1% |
G |
G |
rs5743504 |
IIPGA-BPI-7747 |
| 8803 |
chr20:37624201 |
6158 A/G |
G (177) |
A (1) |
|
|
1% |
G |
G |
rs5743505 |
IIPGA-BPI-8803 |
| 8909 |
chr20:37624307 |
6264 C/T |
T (167) |
C (11) |
|
|
6% |
T |
T |
rs5741801 |
IIPGA-BPI-8909 |
| 8955 |
chr20:37624353 |
6310 C/G |
G (178) |
C (2) |
|
|
1% |
G |
G |
rs5743506 |
IIPGA-BPI-8955 |
| 9083 |
chr20:37624481 |
6438 C/G |
G (165) |
C (15) |
|
|
8% |
G |
G |
rs5743507 |
IIPGA-BPI-9083 |
| 9218 |
chr20:37624616 |
6573 C/T |
C (152) |
T (26) |
|
|
14% |
T |
T |
rs1891032 |
IIPGA-BPI-9218 |
| 10059 |
chr20:37625443 |
7400 C/G |
G (177) |
C (1) |
|
|
1% |
G |
G |
rs5743508 |
IIPGA-BPI-10059 |
| 10214 |
chr20:37625598 |
7555 A/G |
A (156) |
G (22) |
|
|
12% |
A |
A |
rs3746476 |
IIPGA-BPI-10214 |
| 10359 |
chr20:37625743 |
7700 C/T |
C (169) |
T (9) |
|
|
5% |
C |
C |
rs5743509 |
IIPGA-BPI-10359 |
| 16923 |
chr20:37632184 |
14141 A/G |
G (185) |
A (1) |
|
|
1% |
G |
G |
rs5741802 |
IIPGA-BPI-16923 |
| 17016 |
chr20:37632277 |
14234 A/G |
G (102) |
A (82) |
|
|
44% |
G |
G |
rs4358188 |
IIPGA-BPI-17016 |
| 17259 |
chr20:37632520 |
14477 A/G |
G (103) |
A (83) |
|
|
45% |
A |
A |
rs5741803 |
IIPGA-BPI-17259 |
| 18646 |
chr20:37633886 |
15843 C/T |
T (172) |
C (14) |
|
|
8% |
T |
T |
rs5743510 |
IIPGA-BPI-18646 |
| 19123 |
chr20:37634363 |
16320 C/G |
G (162) |
C (20) |
|
|
11% |
G |
G |
rs6123586 |
IIPGA-BPI-19123 |
| 22514 |
chr20:37637689 |
19646 C/G |
C (179) |
G (1) |
|
|
1% |
C |
C |
rs5743512 |
IIPGA-BPI-22514 |
| 22596 |
chr20:37637771 |
19728 C/T |
C (165) |
T (15) |
|
|
8% |
C |
C |
rs5741804 |
IIPGA-BPI-22596 |
| 22679 |
chr20:37637854 |
19811 A/C |
A (175) |
C (5) |
|
|
3% |
A |
A |
rs5743513 |
IIPGA-BPI-22679 |
| 22708 |
chr20:37637883 |
19840 A/G |
G (179) |
A (1) |
|
|
1% |
G |
G |
rs5743514 |
IIPGA-BPI-22708 |
| 22755 |
chr20:37637930 |
19887 A/C |
C (179) |
A (1) |
|
|
1% |
C |
C |
rs5743515 |
IIPGA-BPI-22755 |
| 22865 |
chr20:37638040 |
19997 A/G |
A (177) |
G (3) |
|
|
2% |
A |
A |
rs5741805 |
IIPGA-BPI-22865 |
| 22967 |
chr20:37638142 |
20099 A/T |
T (179) |
A (1) |
|
|
1% |
T |
T |
rs5743516 |
IIPGA-BPI-22967 |
| 23356 |
chr20:37638526 |
20483 C/T |
C (99) |
T (77) |
|
|
41% |
C |
C |
rs5741806 |
IIPGA-BPI-23356 |
| 23377 |
chr20:37638547 |
20504 C/G |
C (176) |
G (6) |
|
|
3% |
C |
C |
rs5743517 |
IIPGA-BPI-23377 |
| 23378 |
chr20:37638548 |
20505 C/G |
C (180) |
G (2) |
|
|
1% |
C |
C |
rs5741807 |
IIPGA-BPI-23378 |
| 23397 |
chr20:37638567 |
20524 A/T |
A (176) |
T (6) |
|
|
3% |
A |
A |
rs5743518 |
IIPGA-BPI-23397 |
| 23654 |
chr20:37638824 |
20781 C/G |
G (177) |
C (5) |
|
|
3% |
G |
G |
rs5743519 |
IIPGA-BPI-23654 |
| 23700 |
chr20:37638870 |
20827 A/G/T |
G (170) |
A (10) |
T (2) |
|
5% |
G |
G |
rs5743520 |
IIPGA-BPI-23700 |
| 23754 |
chr20:37638924 |
20881 A/T |
A (177) |
T (5) |
|
|
3% |
A |
A |
rs5743521 |
IIPGA-BPI-23754 |
| 23758 |
chr20:37638928 |
20885 G/T |
G (181) |
T (1) |
|
|
1% |
G |
G |
rs5743522 |
IIPGA-BPI-23758 |
| 24861 |
chr20:37640017 |
21974 A/G |
G (176) |
A (6) |
|
|
3% |
G |
G |
rs5741808 |
IIPGA-BPI-24861 |
| 24997 |
chr20:37640153 |
22110 C/T |
C (180) |
T (2) |
|
|
1% |
C |
C |
rs5743523 |
IIPGA-BPI-24997 |
| 25063 |
chr20:37640219 |
22176 A/G |
G (181) |
A (1) |
|
|
1% |
G |
G |
rs5743524 |
IIPGA-BPI-25063 |
| 25121 |
chr20:37640277 |
22234 G/T |
G (180) |
T (2) |
|
|
1% |
G |
G |
rs5743525 |
IIPGA-BPI-25121 |
| 26126 |
chr20:37641268 |
23225 A/G |
G (176) |
A (2) |
|
|
1% |
G |
G |
rs5743526 |
IIPGA-BPI-26126 |
| 26306 |
chr20:37641448 |
23405 C/T |
C (176) |
T (2) |
|
|
1% |
C |
C |
rs5743527 |
IIPGA-BPI-26306 |
| 26313 |
chr20:37641455 |
23412 A/G |
A (169) |
G (9) |
|
|
5% |
A |
A |
rs5741809 |
IIPGA-BPI-26313 |
| 26387 |
chr20:37641529 |
23486 C/T |
C (169) |
T (9) |
|
|
5% |
C |
C |
rs5741810 |
IIPGA-BPI-26387 |
| 26396 |
chr20:37641538 |
23495 C/T |
T (169) |
C (9) |
|
|
5% |
T |
T |
rs5743528 |
IIPGA-BPI-26396 |
| 26412 |
chr20:37641554 |
23511 C/T |
T (169) |
C (9) |
|
|
5% |
T |
T |
rs5743529 |
IIPGA-BPI-26412 |
| 26484 |
chr20:37641626 |
23583 C/T |
C (169) |
T (9) |
|
|
5% |
C |
C |
rs5743530 |
IIPGA-BPI-26484 |
| 26503 |
chr20:37641645 |
23602 A/G |
A (177) |
G (1) |
|
|
1% |
A |
A |
rs5743531 |
IIPGA-BPI-26503 |
| 26602 |
chr20:37641744 |
23701 A/G |
G (171) |
A (7) |
|
|
4% |
G |
G |
rs5743532 |
IIPGA-BPI-26602 |
| 29660 |
chr20:37644747 |
26704 A/G |
G (99) |
A (85) |
|
|
46% |
G |
G |
rs5743533 |
IIPGA-BPI-29660 |
| 29695 |
chr20:37644782 |
26739 A/G |
G (93) |
A (91) |
|
|
49% |
A |
A |
rs5743534 |
IIPGA-BPI-29695 |
| 29778 |
chr20:37644865 |
26822 G/T |
T (177) |
G (7) |
|
|
4% |
T |
T |
rs5743535 |
IIPGA-BPI-29778 |
| 29888 |
chr20:37644975 |
26932 A/G |
G (178) |
A (6) |
|
|
3% |
G |
G |
rs5743536 |
IIPGA-BPI-29888 |
| 29907 |
chr20:37644994 |
26951 C/T |
C (177) |
T (7) |
|
|
4% |
C |
C |
rs5743537 |
IIPGA-BPI-29907 |
| 29908 |
chr20:37644995 |
26952 A/G |
G (182) |
A (2) |
|
|
1% |
G |
A |
rs2425357 |
IIPGA-BPI-29908 |
| 29918 |
chr20:37645005 |
26962 C/T |
T (183) |
C (1) |
|
|
1% |
T |
T |
rs5743538 |
IIPGA-BPI-29918 |
| 29924 |
chr20:37645011 |
26968 A/G |
G (179) |
A (5) |
|
|
3% |
G |
G |
rs5743539 |
IIPGA-BPI-29924 |
| 33051 |
chr20:37648082 |
30039 C/T |
T (181) |
C (1) |
|
|
1% |
T |
T |
rs5743540 |
IIPGA-BPI-33051 |
| 33065 |
chr20:37648096 |
30053 A/G |
G (101) |
A (81) |
|
|
44% |
A |
A |
rs2275954 |
IIPGA-BPI-33065 |
| 33177 |
chr20:37648208 |
30165 C/T |
C (181) |
T (1) |
|
|
1% |
C |
C |
rs2275955 |
IIPGA-BPI-33177 |
| 33178 |
chr20:37648209 |
30166 A/G |
G (181) |
A (1) |
|
|
1% |
G |
G |
rs2275956 |
IIPGA-BPI-33178 |
| 33188 |
chr20:37648219 |
30176 A/G |
G (180) |
A (2) |
|
|
1% |
G |
G |
rs5743541 |
IIPGA-BPI-33188 |
| 33316 |
chr20:37648347 |
30304 C/T |
T (181) |
C (1) |
|
|
1% |
T |
T |
rs2425359 |
IIPGA-BPI-33316 |
| 34413 |
chr20:37649431 |
31388 A/G |
A (165) |
G (1) |
|
|
1% |
A |
A |
rs5743542 |
IIPGA-BPI-34413 |
| 34466 |
chr20:37649484 |
31441 C/T |
C (163) |
T (1) |
|
|
1% |
C |
C |
rs5743543 |
IIPGA-BPI-34466 |
| 34582 |
chr20:37649600 |
31557 C/G |
G (163) |
C (1) |
|
|
1% |
G |
G |
rs5743544 |
IIPGA-BPI-34582 |
| 34600 |
chr20:37649618 |
31575 A/G |
A (161) |
G (3) |
|
|
2% |
A |
A |
rs5743545 |
IIPGA-BPI-34600 |
| 34608 |
chr20:37649626 |
31583 C/T |
T (161) |
C (3) |
|
|
2% |
T |
T |
rs5743546 |
IIPGA-BPI-34608 |
| 34824 |
chr20:37649842 |
31799 A/C |
C (163) |
A (1) |
|
|
1% |
C |
C |
rs5743547 |
IIPGA-BPI-34824 |
| 35883 |
chr20:37650884 |
32841 C/T |
T (182) |
C (2) |
|
|
1% |
T |
T |
rs5743548 |
IIPGA-BPI-35883 |
| 35997 |
chr20:37650998 |
32955 C/G |
G (185) |
C (1) |
|
|
1% |
G |
G |
rs5743549 |
IIPGA-BPI-35997 |
| 36045 |
chr20:37651046 |
33003 A/G |
G (118) |
A (68) |
|
|
37% |
A |
A |
rs1131847 |
IIPGA-BPI-36045 |
| 36334 |
chr20:37651335 |
33292 A/G |
A (117) |
G (69) |
|
|
37% |
G |
G |
rs2256754 |
IIPGA-BPI-36334 |
|
| © 2001-2004, Alberto Riva, CHIP |