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The following information is based on the unmasked version of the consensus sequence. We have also generated data for the masked version of the assembly. There is also an Introduction available if you are looking for a place to get started.

Information
Name MD-2 protein
Source InnateImmunity
Chromosome chr8 (+) (chr8:75066144-75103859)
Accession NM_015364
SNPs 15
Indels 0
Populations 2
Subjects 0
Links [ SNPper ] [ GoldenPath ] [ Gene Image ] [ LocusLink ] [ Omim ] [ PubMed ]
Notes Note that LY96 used to be called MD-2.
Biological Significance In mammals, LPS initiates its biological activities through a heteromeric receptor complex containing CD14, TLR4, and at least one other protein, MD-2. LPS binds directly to CD14 and is cross-linked specifically to TLR4 and MD-2 only when co-expressed with CD14. Thus LPS is in close proximity to the three known proteins of its membrane receptor complex, and binds directly to each of the members of the tripartite LPS receptor complex. MD-2 is a required component of the LPS signaling complex and (similar to CD14) can function as a soluble receptor for cells that do not otherwise express it. Molecular genetic analysis of an LPS-nonresponder mutant cell line has recently shown that a point mutation in a conserved region of MD-2 abolishes LPS-induced signaling. Of note, decreased expression of MD-2 and TLR4 correlates with protection of intestinal epithelial cells against dysregulated expression of proinflammatory genes in response to bacterial LPS.. ( See Omim for more ... )
SNP Discovery Data
Raw data
X
Prettybase
X
Refseq (FASTA)
X
Dynamic
X
SNPper Analysis
X
Flanking Sequences
X
Sequenom SNP Contexts
X
Annotated Refseq (FASTA)
X
Primers
X
Coverage
X
Archive
X
Genbank
 
Alleles
X
Allele Counts
X
Allele Frequencies
   
Genotypes
X
Genotype Counts
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Genotype Frequencies
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Genogram by Genotype
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Genogram by ID
Haplotypes
X
Phase Output
    X
Phase2 Output
   
Linkage Disequlibrium
X
African American
X
European American
 
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