User: Anonymous User ( Login | Register )


Related documents:
  • Phase output blocks

  • See corresponding data for another gene
Haplotype counts inferred by Phase*.
Gene = LY64, Minimum allele freq. in ANY population= 0.000, 9 SNP, 1038 Subjects
Note that the haplotypes shown below comprise alleles at
the following SNP locations in the order show. The first column
is the allele position in the haplotype. The SNP column is the
SNP position in the reference sequence (1=first base). The RelativeOffset column
is the SNP offset relative to the Gene transcription start codon.
#SNPRelativeOffset
11956-611
2262457
32821254
43067500
542181651
645411974
749432376
854712904
91396711400

Haplotype Frequency Sort Order

Haplotype All Controls Cases
GGCCTCATC   1077 51.9% 553 53.2% 524 50.6%
GGCCTCATA   570 27.5% 273 26.2% 297 28.7%
GCCCTCATC   176 8.5% 77 7.4% 99 9.6%
GGAGGTGCC   98 4.7% 60 5.8% 38 3.7%
AGAGGTGCC   55 2.6% 22 2.1% 33 3.2%
AGCCTCATC   36 1.7% 17 1.6% 19 1.8%
AGCGTTGTC   29 1.4% 17 1.6% 12 1.2%
GGCCTCGTC   07 0.3% 03 0.3% 04 0.4%
GGCCTCACC   06 0.3% 03 0.3% 03 0.3%
GCCCTCATA   03 0.1% 01 0.1% 02 0.2%
GGCGTTGTC   02 0.1% 01 0.1% 01 0.1%
GGCGTCATC   02 0.1% 02 0.2% 00 0.0%
GGCCGCATA   02 0.1% 02 0.2% 00 0.0%
GGAGGTATC   02 0.1% 02 0.2% 00 0.0%
GGCGTCATA   01 0.0% 00 0.0% 01 0.1%
GGCCTTATC   01 0.0% 00 0.0% 01 0.1%
GGCCTCGCA   01 0.0% 01 0.1% 00 0.0%
GGCCGCATC   01 0.0% 01 0.1% 00 0.0%
GGAGTTGCC   01 0.0% 01 0.1% 00 0.0%
GGAGGTGTC   01 0.0% 01 0.1% 00 0.0%
GGACTTGCC   01 0.0% 01 0.1% 00 0.0%
GGACGTGCC   01 0.0% 01 0.1% 00 0.0%
AGCCTCATA   01 0.0% 00 0.0% 01 0.1%
AGAGTTGCC   01 0.0% 00 0.0% 01 0.1%
AGAGGTGCA   01 0.0% 01 0.1% 00 0.0%
Totals   2076   1040   1036  

Haplotype Alphabetic Sort Order

AGAGGTGCA   01 0.0% 01 0.1% 00 0.0%
AGAGGTGCC   55 2.6% 22 2.1% 33 3.2%
AGAGTTGCC   01 0.0% 00 0.0% 01 0.1%
AGCCTCATA   01 0.0% 00 0.0% 01 0.1%
AGCCTCATC   36 1.7% 17 1.6% 19 1.8%
AGCGTTGTC   29 1.4% 17 1.6% 12 1.2%
GCCCTCATA   03 0.1% 01 0.1% 02 0.2%
GCCCTCATC   176 8.5% 77 7.4% 99 9.6%
GGACGTGCC   01 0.0% 01 0.1% 00 0.0%
GGACTTGCC   01 0.0% 01 0.1% 00 0.0%
GGAGGTATC   02 0.1% 02 0.2% 00 0.0%
GGAGGTGCC   98 4.7% 60 5.8% 38 3.7%
GGAGGTGTC   01 0.0% 01 0.1% 00 0.0%
GGAGTTGCC   01 0.0% 01 0.1% 00 0.0%
GGCCGCATA   02 0.1% 02 0.2% 00 0.0%
GGCCGCATC   01 0.0% 01 0.1% 00 0.0%
GGCCTCACC   06 0.3% 03 0.3% 03 0.3%
GGCCTCATA   570 27.5% 273 26.2% 297 28.7%
GGCCTCATC   1077 51.9% 553 53.2% 524 50.6%
GGCCTCGCA   01 0.0% 01 0.1% 00 0.0%
GGCCTCGTC   07 0.3% 03 0.3% 04 0.4%
GGCCTTATC   01 0.0% 00 0.0% 01 0.1%
GGCGTCATA   01 0.0% 00 0.0% 01 0.1%
GGCGTCATC   02 0.1% 02 0.2% 00 0.0%
GGCGTTGTC   02 0.1% 01 0.1% 01 0.1%
Totals   2076   1040   1036  
Minimal SNP (shown in red italics) needed to unambiguously distinguish haplotypes seen more than once, by population group
Please note that this an experimental resource which is still under test.Please email Ross Lazarus if you have comments or find any errors or anomalies

Group=Cases (blocklist=[[1, 10]], snplist=[[1, 2, 3, 4, 7, 8, 9]])
Haplotype heterozygosity: Observed = 0.6499959, Expected = 0.8337568
Effective # Haplotypes = 2.857, Minimum #SNP to distinguish haplotypes seen more than once: 9
-611:GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGGAA
57:GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCCGGGGG
254:CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC