Innate Immunity in Heart, Lung and Blood Disease
Programs for Genomic Applications
|
- View this as Plain Text
- See corresponding data for another gene
European-American Asthma 11:50 Wednesday, February 4, 2004 38
SNP = CD209_11456
The FREQ Procedure
Table of Allele Frequency
Allele Frequency
Frequency|
Percent |A |T | Total
---------+--------+--------+
Control | 140 | 144 | 284
| 23.49 | 24.16 | 47.65
---------+--------+--------+
Case | 149 | 163 | 312
| 25.00 | 27.35 | 52.35
---------+--------+--------+
Total 289 307 596
48.49 51.51 100.00
Frequency Missing = 1462
Statistics for Table of Allele Frequency
Statistic DF Value Prob
------------------------------------------------------
Chi-Square 1 0.1410 0.7072
Likelihood Ratio Chi-Square 1 0.1410 0.7072
Continuity Adj. Chi-Square 1 0.0861 0.7691
Mantel-Haenszel Chi-Square 1 0.1408 0.7075
Phi Coefficient 0.0154
Contingency Coefficient 0.0154
Cramer's V 0.0154
Fisher's Exact Test
----------------------------------
Cell (1,1) Frequency (F) 140
Left-sided Pr <= F 0.6764
Right-sided Pr >= F 0.3846
Table Probability (P) 0.0609
Two-sided Pr <= P 0.7429
Estimates of the Relative Risk (Row1/Row2)
Type of Study Value 95% Confidence Limits
-----------------------------------------------------------------
Case-Control (Odds Ratio) 1.0636 0.7710 1.4671
Cohort (Col1 Risk) 1.0322 0.8748 1.2180
Cohort (Col2 Risk) 0.9705 0.8302 1.1346
Effective Sample Size = 596
Frequency Missing = 1462
WARNING: 71% of the data are missing.
European-American Asthma 11:50 Wednesday, February 4, 2004 39
SNP = CD209_11456
The FREQ Procedure
Table of Allele Frequency
Allele Frequency
Frequency|
Percent |1 |4 | Total
---------+--------+--------+
Control | 133 | 9 | 142
| 44.63 | 3.02 | 47.65
---------+--------+--------+
Case | 144 | 12 | 156
| 48.32 | 4.03 | 52.35
---------+--------+--------+
Total 277 21 298
92.95 7.05 100.00
Frequency Missing = 731
Statistics for Table of Allele Frequency
Statistic DF Value Prob
------------------------------------------------------
Chi-Square 1 0.2081 0.6482
Likelihood Ratio Chi-Square 1 0.2090 0.6475
Continuity Adj. Chi-Square 1 0.0527 0.8184
Mantel-Haenszel Chi-Square 1 0.2074 0.6488
Phi Coefficient 0.0264
Contingency Coefficient 0.0264
Cramer's V 0.0264
Pearson Chi-Square Test
----------------------------------
Chi-Square 0.2081
DF 1
Asymptotic Pr > ChiSq 0.6482
Exact Pr >= ChiSq 0.6599
Fisher's Exact Test
----------------------------------
Cell (1,1) Frequency (F) 133
Left-sided Pr <= F 0.7516
Right-sided Pr >= F 0.4107
Table Probability (P) 0.1623
Two-sided Pr <= P 0.8214
European-American Asthma 11:50 Wednesday, February 4, 2004 40
SNP = CD209_11456
The FREQ Procedure
Statistics for Table of Allele Frequency
Estimates of the Relative Risk (Row1/Row2)
Type of Study Value 95% Confidence Limits
-----------------------------------------------------------------
Case-Control (Odds Ratio) 1.2315 0.5028 3.0163
Cohort (Col1 Risk) 1.0147 0.9534 1.0799
Cohort (Col2 Risk) 0.8239 0.3579 1.8968
Odds Ratio (Case-Control Study)
-----------------------------------
Odds Ratio 1.2315
Asymptotic Conf Limits
95% Lower Conf Limit 0.5028
95% Upper Conf Limit 3.0163
Exact Conf Limits
95% Lower Conf Limit 0.4591
95% Upper Conf Limit 3.4218
Effective Sample Size = 298
Frequency Missing = 731
WARNING: 71% of the data are missing.
European-American Asthma 11:50 Wednesday, February 4, 2004 41
SNP = CD209_4674
The FREQ Procedure
Table of Allele Frequency
Allele Frequency
Frequency|
Percent |C |T | Total
---------+--------+--------+
Control | 195 | 795 | 990
| 9.85 | 40.15 | 50.00
---------+--------+--------+
Case | 194 | 796 | 990
| 9.80 | 40.20 | 50.00
---------+--------+--------+
Total 389 1591 1980
19.65 80.35 100.00
Frequency Missing = 78
Statistics for Table of Allele Frequency
Statistic DF Value Prob
------------------------------------------------------
Chi-Square 1 0.0032 0.9549
Likelihood Ratio Chi-Square 1 0.0032 0.9549
Continuity Adj. Chi-Square 1 0.0000 1.0000
Mantel-Haenszel Chi-Square 1 0.0032 0.9549
Phi Coefficient 0.0013
Contingency Coefficient 0.0013
Cramer's V 0.0013
Fisher's Exact Test
----------------------------------
Cell (1,1) Frequency (F) 195
Left-sided Pr <= F 0.5450
Right-sided Pr >= F 0.5000
Table Probability (P) 0.0450
Two-sided Pr <= P 1.0000
Estimates of the Relative Risk (Row1/Row2)
Type of Study Value 95% Confidence Limits
-----------------------------------------------------------------
Case-Control (Odds Ratio) 1.0064 0.8063 1.2562
Cohort (Col1 Risk) 1.0052 0.8411 1.2012
Cohort (Col2 Risk) 0.9987 0.9562 1.0432
Effective Sample Size = 1980
Frequency Missing = 78
European-American Asthma 11:50 Wednesday, February 4, 2004 42
SNP = CD209_4674
The FREQ Procedure
Table of Allele Frequency
Allele Frequency
Frequency|
Percent |2 |4 | Total
---------+--------+--------+
Control | 18 | 477 | 495
| 1.82 | 48.18 | 50.00
---------+--------+--------+
Case | 21 | 474 | 495
| 2.12 | 47.88 | 50.00
---------+--------+--------+
Total 39 951 990
3.94 96.06 100.00
Frequency Missing = 39
Statistics for Table of Allele Frequency
Statistic DF Value Prob
------------------------------------------------------
Chi-Square 1 0.2402 0.6240
Likelihood Ratio Chi-Square 1 0.2405 0.6239
Continuity Adj. Chi-Square 1 0.1068 0.7439
Mantel-Haenszel Chi-Square 1 0.2400 0.6242
Phi Coefficient -0.0156
Contingency Coefficient 0.0156
Cramer's V -0.0156
Pearson Chi-Square Test
----------------------------------
Chi-Square 0.2402
DF 1
Asymptotic Pr > ChiSq 0.6240
Exact Pr >= ChiSq 0.7443
Fisher's Exact Test
----------------------------------
Cell (1,1) Frequency (F) 18
Left-sided Pr <= F 0.3722
Right-sided Pr >= F 0.7430
Table Probability (P) 0.1152
Two-sided Pr <= P 0.7443
European-American Asthma 11:50 Wednesday, February 4, 2004 43
SNP = CD209_4674
The FREQ Procedure
Statistics for Table of Allele Frequency
Estimates of the Relative Risk (Row1/Row2)
Type of Study Value 95% Confidence Limits
-----------------------------------------------------------------
Case-Control (Odds Ratio) 0.8518 0.4481 1.6190
Cohort (Col1 Risk) 0.8571 0.4624 1.5888
Cohort (Col2 Risk) 1.0063 0.9813 1.0320
Odds Ratio (Case-Control Study)
-----------------------------------
Odds Ratio 0.8518
Asymptotic Conf Limits
95% Lower Conf Limit 0.4481
95% Upper Conf Limit 1.6190
Exact Conf Limits
95% Lower Conf Limit 0.4220
95% Upper Conf Limit 1.7032
Effective Sample Size = 990
Frequency Missing = 39
European-American Asthma 11:50 Wednesday, February 4, 2004 44
SNP = CD209_4871
The FREQ Procedure
Table of Allele Frequency
Allele Frequency
Frequency|
Percent |C |T | Total
---------+--------+--------+
Control | 614 | 336 | 950
| 32.38 | 17.72 | 50.11
---------+--------+--------+
Case | 628 | 318 | 946
| 33.12 | 16.77 | 49.89
---------+--------+--------+
Total 1242 654 1896
65.51 34.49 100.00
Frequency Missing = 162
Statistics for Table of Allele Frequency
Statistic DF Value Prob
------------------------------------------------------
Chi-Square 1 0.6448 0.4220
Likelihood Ratio Chi-Square 1 0.6448 0.4220
Continuity Adj. Chi-Square 1 0.5695 0.4504
Mantel-Haenszel Chi-Square 1 0.6444 0.4221
Phi Coefficient -0.0184
Contingency Coefficient 0.0184
Cramer's V -0.0184
Fisher's Exact Test
----------------------------------
Cell (1,1) Frequency (F) 614
Left-sided Pr <= F 0.2252
Right-sided Pr >= F 0.8027
Table Probability (P) 0.0279
Two-sided Pr <= P 0.4396
Estimates of the Relative Risk (Row1/Row2)
Type of Study Value 95% Confidence Limits
-----------------------------------------------------------------
Case-Control (Odds Ratio) 0.9253 0.7656 1.1183
Cohort (Col1 Risk) 0.9736 0.9120 1.0393
Cohort (Col2 Risk) 1.0522 0.9293 1.1912
Effective Sample Size = 1896
Frequency Missing = 162
European-American Asthma 11:50 Wednesday, February 4, 2004 45
SNP = CD209_4871
The FREQ Procedure
Table of Allele Frequency
Allele Frequency
Frequency|
Percent |2 |4 | Total
---------+--------+--------+
Control | 199 | 276 | 475
| 20.99 | 29.11 | 50.11
---------+--------+--------+
Case | 205 | 268 | 473
| 21.62 | 28.27 | 49.89
---------+--------+--------+
Total 404 544 948
42.62 57.38 100.00
Frequency Missing = 81
Statistics for Table of Allele Frequency
Statistic DF Value Prob
------------------------------------------------------
Chi-Square 1 0.2025 0.6527
Likelihood Ratio Chi-Square 1 0.2025 0.6527
Continuity Adj. Chi-Square 1 0.1477 0.7007
Mantel-Haenszel Chi-Square 1 0.2023 0.6529
Phi Coefficient -0.0146
Contingency Coefficient 0.0146
Cramer's V -0.0146
Pearson Chi-Square Test
----------------------------------
Chi-Square 0.2025
DF 1
Asymptotic Pr > ChiSq 0.6527
Exact Pr >= ChiSq 0.6936
Fisher's Exact Test
----------------------------------
Cell (1,1) Frequency (F) 199
Left-sided Pr <= F 0.3504
Right-sided Pr >= F 0.6970
Table Probability (P) 0.0473
Two-sided Pr <= P 0.6936
European-American Asthma 11:50 Wednesday, February 4, 2004 46
SNP = CD209_4871
The FREQ Procedure
Statistics for Table of Allele Frequency
Estimates of the Relative Risk (Row1/Row2)
Type of Study Value 95% Confidence Limits
-----------------------------------------------------------------
Case-Control (Odds Ratio) 0.9426 0.7286 1.2194
Cohort (Col1 Risk) 0.9666 0.8339 1.1206
Cohort (Col2 Risk) 1.0255 0.9189 1.1445
Odds Ratio (Case-Control Study)
-----------------------------------
Odds Ratio 0.9426
Asymptotic Conf Limits
95% Lower Conf Limit 0.7286
95% Upper Conf Limit 1.2194
Exact Conf Limits
95% Lower Conf Limit 0.7225
95% Upper Conf Limit 1.2297
Effective Sample Size = 948
Frequency Missing = 81