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The following information is based on the masked version of the consensus sequence. We have also generated data for the unmasked version of the assembly. There is also an Introduction available if you are looking for a place to get started.

All of the "Masked" resources were generated by running the RepeatMasker program on the assembled consensus sequence, and then filtering SNP loci which are determined to be too close to a repeat region for adequate primer design. This masked sequence and prettybase pair are then processed using our standard bioinformatics pipeline.



Information
Name CD14 antigen precursor
Source InnateImmunity
Chromosome chr5 (-) (chr5:139991505-139992956)
Accession NM_000591
SNPs 10
Indels 0
Populations 4
Subjects 0
Links [ SNPper ] [ GoldenPath ] [ Gene Image ] [ LocusLink ] [ Omim ] [ PubMed ]
Biological Significance CD14 was the first pattern recognition receptor to be identified. CD14 is expressed on, and secreted by, myeloid cells. CD14-negative cells, such as epithelial and endothelial cells, become responsive to bacterial pathogens in the presence of soluble CD14 (sCD14), a protein present in the serum in microgram amounts and secreted by monocytes and the liver. Membrane-bound and sCD14 bind a variety of bacterial products, e.g., LPS from Gram-negative bacteria, lipoteichoic acids from Gram-positive bacteria, mycobacterial glycolipids, and mannans from yeast s. Responses of inflammatory cells to subpicomolar concentrations of bacterial ligands require LPS-binding protein (LBP), a lipid transfer protein that recognizes the lipid A moiety of LPS and facilitates the binding of LPS to sCD14 or membrane CD14. At the molecular level, CD14 acts by transferring LPS and other bacterial ligands from circulating LPS-binding protein to the Toll-like receptor 4/MD-2 signaling complex. Engagement of this complex results in the activation of innate host defense mechanisms, such as release of inflammatory cytokines, and in upregulation of costimulatory molecules, thus providing cues that are essential to directing adaptive immune responses. A single nucleotide polymorphism in the CD14 promoter that is accompanied by increased levels of sCD14 has been found to be associated with decreased total serum IgE levels. Functional genomics studies have shown that the same polymorphism enhances CD14 transcriptional activity by decreasing the affinity of the promoter for Sp proteins.. ( See Omim for more ... )
SNP Discovery Data
Raw data
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Prettybase
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Refseq (FASTA)
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Dynamic
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SNPper Analysis
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Flanking Sequences
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Sequenom SNP Contexts
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Annotated Refseq (FASTA)
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Primers
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Coverage
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Archive
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Genbank
 
Alleles
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Allele Counts
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Allele Frequencies
   
Genotypes
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Genotype Counts
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Genotype Frequencies
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Genogram by Genotype
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Genogram by ID
Haplotypes
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Phase Output
    X
Phase2 Output
   
Linkage Disequlibrium
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African American
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European American
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Hispanic American
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Asthmatic
Association Study Data
Raw data

Prettybase

SNPper Import

Flanking Sequences

Sequenom SNP Contexts
Alleles

Allele Counts

Allele Frequencies

Case-Control Analysis
 
Genotypes

Genotype Counts

Genotype Frequencies

Genogram by Genotype

Genogram by ID
Haplotypes

Phase Output
     
Linkage Disequlibrium

Cases

Controls
   
 
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